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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KA41_ASTMXNuclear transcription factor, X-box binding-like 1. (853 aa)    
Predicted Functional Partners:
rps12
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
 
 0.750
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.748
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.698
Rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
   0.693
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
   0.693
rps19
Ribosomal protein S19.
    
   0.693
rps13
Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
    
   0.693
rpl7a
Ribosomal protein L7a.
    
 
 0.631
RPS20
Ribosomal protein S20.
    
   0.629
RSRC1
Arginine and serine rich coiled-coil 1.
    
 
 0.618
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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