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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1219 aa)    
Predicted Functional Partners:
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.999
ENSAMXP00000039716
CWC25 spliceosome associated protein homolog.
    
 0.997
yju2
YJU2 splicing factor homolog.
   
 0.997
slu7
SLU7 homolog, splicing factor.
   
 0.996
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.993
Cwc22
CWC22 spliceosome associated protein homolog.
   
 0.993
prpf8
Pre-mRNA processing factor 8.
   
 
 0.993
Cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 0.992
bud31
BUD31 homolog.
    
 0.991
prpf19
Pre-mRNA processing factor 19.
   
 0.991
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.