W5KAU8_ASTMX protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5KAU8_ASTMX

WD repeat, sterile alpha motif and U-box domain containing 1. (440 aa)

Predicted Functional Partners:

ENSAMXP00000051962

0.986

ttc37

0.839

skiv2l

0.837

Cdc73

0.808

paf1

0.785

LOC103023174

0.704

ddx20

0.684

ctr9

0.661

cinp

0.661

LOC103022438

0.659

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdc73	ENSAMXP00000051962	ENSAMXP00000002063	ENSAMXP00000051962	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
Cdc73	W5KAU8_ASTMX	ENSAMXP00000002063	ENSAMXP00000004709	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	WD repeat, sterile alpha motif and U-box domain containing 1.	0.808
Cdc73	cinp	ENSAMXP00000002063	ENSAMXP00000030858	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Cyclin-dependent kinase 2 interacting protein.	0.977
Cdc73	ctr9	ENSAMXP00000002063	ENSAMXP00000010458	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.999
Cdc73	paf1	ENSAMXP00000002063	ENSAMXP00000021543	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.999
ENSAMXP00000051962	Cdc73	ENSAMXP00000051962	ENSAMXP00000002063	LEO1 homolog, Paf1/RNA polymerase II complex component.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.999
ENSAMXP00000051962	W5KAU8_ASTMX	ENSAMXP00000051962	ENSAMXP00000004709	LEO1 homolog, Paf1/RNA polymerase II complex component.	WD repeat, sterile alpha motif and U-box domain containing 1.	0.986
ENSAMXP00000051962	cinp	ENSAMXP00000051962	ENSAMXP00000030858	LEO1 homolog, Paf1/RNA polymerase II complex component.	Cyclin-dependent kinase 2 interacting protein.	0.999
ENSAMXP00000051962	ctr9	ENSAMXP00000051962	ENSAMXP00000010458	LEO1 homolog, Paf1/RNA polymerase II complex component.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.999
ENSAMXP00000051962	paf1	ENSAMXP00000051962	ENSAMXP00000021543	LEO1 homolog, Paf1/RNA polymerase II complex component.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.999
LOC103022438	W5KAU8_ASTMX	ENSAMXP00000016769	ENSAMXP00000004709	Neuropeptide VF precursor.	WD repeat, sterile alpha motif and U-box domain containing 1.	0.659
LOC103023174	W5KAU8_ASTMX	ENSAMXP00000003915	ENSAMXP00000004709	Dehydrogenase/reductase (SDR family) member 4.	WD repeat, sterile alpha motif and U-box domain containing 1.	0.704
W5KAU8_ASTMX	Cdc73	ENSAMXP00000004709	ENSAMXP00000002063	WD repeat, sterile alpha motif and U-box domain containing 1.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.808
W5KAU8_ASTMX	ENSAMXP00000051962	ENSAMXP00000004709	ENSAMXP00000051962	WD repeat, sterile alpha motif and U-box domain containing 1.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.986
W5KAU8_ASTMX	LOC103022438	ENSAMXP00000004709	ENSAMXP00000016769	WD repeat, sterile alpha motif and U-box domain containing 1.	Neuropeptide VF precursor.	0.659
W5KAU8_ASTMX	LOC103023174	ENSAMXP00000004709	ENSAMXP00000003915	WD repeat, sterile alpha motif and U-box domain containing 1.	Dehydrogenase/reductase (SDR family) member 4.	0.704
W5KAU8_ASTMX	cinp	ENSAMXP00000004709	ENSAMXP00000030858	WD repeat, sterile alpha motif and U-box domain containing 1.	Cyclin-dependent kinase 2 interacting protein.	0.661
W5KAU8_ASTMX	ctr9	ENSAMXP00000004709	ENSAMXP00000010458	WD repeat, sterile alpha motif and U-box domain containing 1.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.661
W5KAU8_ASTMX	ddx20	ENSAMXP00000004709	ENSAMXP00000029161	WD repeat, sterile alpha motif and U-box domain containing 1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20.	0.684
W5KAU8_ASTMX	paf1	ENSAMXP00000004709	ENSAMXP00000021543	WD repeat, sterile alpha motif and U-box domain containing 1.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.785