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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
calhm2Calcium homeostasis modulator family member 2, tandem duplicate 1. (320 aa)    
Predicted Functional Partners:
c23h1orf109
C19h1orf109 homolog (H. sapiens).
   
    0.770
ENSAMXP00000051831
Rubicon like autophagy enhancer.
   
    0.724
ENSAMXP00000039716
CWC25 spliceosome associated protein homolog.
   
    0.705
lix1
Limb and CNS expressed 1.
   
    0.595
LIX1L
Limb and CNS expressed 1 like.
   
    0.595
acot11
Acyl-CoA thioesterase 11a.
   
    0.585
LOC103030626
Acyl-CoA thioesterase 11b.
   
    0.585
Nt5dc1
5'-nucleotidase domain containing 1.
      
 0.577
c17h5orf22
Zgc:56556.
   
    0.569
ftsj1
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
   
    0.569
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.