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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103030923Ribosome binding protein 1b. (1263 aa)    
Predicted Functional Partners:
LOC103024402
Ribosome binding protein 1a.
  
  
 
0.906
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.756
ENSAMXP00000033034
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.572
synj2bp
Synaptojanin 2 binding protein.
    
 0.528
LOC103028490
Lysine (K)-specific demethylase 6B, b.
    
 0.496
kdm6b
Lysine (K)-specific demethylase 6B, a.
    
 0.496
Lman1
Lectin, mannose-binding, 1.
   
 
 0.468
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.458
Spcs2
Signal peptidase complex subunit 2.
   
  
 0.455
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.454
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.