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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103030220RPGR interacting protein 1. (1334 aa)    
Predicted Functional Partners:
LOC103026867
Retinitis pigmentosa GTPase regulator b.
    
 
 0.934
RPGR
Uncharacterized protein.
    
 
 0.934
W5LQ66_ASTMX
Uncharacterized protein.
    
 0.832
Nphp4
Nephronophthisis 4.
    
 0.832
ENSAMXP00000037182
Regulator of chromosome condensation 1.
    
 
 0.788
nek8
NIMA-related kinase 8.
    
 
 0.706
nphp1
Nephronophthisis 1.
    
 0.681
Cep290
Centrosomal protein 290.
    
 0.633
spata7
Spermatogenesis associated 7.
   
 
 0.615
acaa2
Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.
    
 
 0.587
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.