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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103035971FRA10A associated CGG repeat 1. (331 aa)    
Predicted Functional Partners:
cwc27
CWC27 spliceosome associated cyclophilin.
   
   0.630
Engase
Endo-beta-N-acetylglucosaminidase.
      
 0.576
ess2
Ess-2 splicing factor homolog.
    
 
 0.573
Cherp
Calcium homeostasis endoplasmic reticulum protein.
    
 
 0.516
mettl3
Methyltransferase like 3; Belongs to the MT-A70-like family.
      
 0.511
Ik
IK cytokine.
   
   0.505
sf3b2
Splicing factor 3b, subunit 2.
    
 
 0.494
zrsr2
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
 
 0.487
LOC103038317
WNK lysine deficient protein kinase 2.
    
  0.435
ENSAMXP00000048966
WNK lysine deficient protein kinase 2.
    
  0.435
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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