Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prdm1PR domain containing 1a, with ZNF domain. (755 aa)    
Predicted Functional Partners:
satb2
DNA-binding protein SATB.
      
 0.773
wnt9b
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
     
 0.770
LOC103021321
SRY-box transcription factor 17.
    
 0.726
LOC103047171
Uncharacterized protein; Belongs to the glycosyltransferase 47 family.
      
 0.714
fgf8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.707
Sox18
SRY-box transcription factor 18.
    
 0.673
prmt5
Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.
    
 
 0.633
fancm
Uncharacterized protein.
    
   0.623
W5L151_ASTMX
Fork-head domain-containing protein.
    
 0.608
ENSAMXP00000029725
Fork-head domain-containing protein.
    
 0.608
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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