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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KBY4_ASTMXStabilin 1. (2457 aa)    
Predicted Functional Partners:
sparc
Secreted protein, acidic, cysteine-rich (osteonectin).
     
 0.706
apob
Apolipoprotein Ba.
   
 
 0.605
LOC103031260
Apolipoprotein Bb, tandem duplicate 2.
   
 
 0.605
LOC111191160
CD44 molecule (Indian blood group) a.
     
0.510
Cd44
Link domain-containing protein.
     
 0.510
LOC103024643
Lymphatic vessel endothelial hyaluronic receptor 1b.
   
 
0.475
LOC103024317
Lymphatic vessel endothelial hyaluronic receptor 1a.
   
 
0.475
mrvi1
Murine retrovirus integration site 1 homolog.
   
 
 0.475
LOC103031148
Src kinase associated phosphoprotein 1.
   
  
 0.446
tsnare1
Si:ch211-208k15.1; Belongs to the syntaxin family.
      
 0.442
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.