close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KBY7_ASTMXTBC1 domain family, member 12b. (432 aa)    
Predicted Functional Partners:
rab11a
RAB11a, member RAS oncogene family.
    
 0.516
W5LR63_ASTMX
RAB11a, member RAS oncogene family, like.
    
 0.516
LOC103047600
RAB11B, member RAS oncogene family, b.
    
 0.516
LOC111194513
RAB11B, member RAS oncogene family, b.
    
 0.516
trappc8
Trafficking protein particle complex 8.
    
 
 0.512
rabl2b
RAB, member of RAS oncogene family-like 2.
    
 0.512
ENSAMXP00000046336
RAB25, member RAS oncogene family a.
    
 0.512
rab25
RAB25, member RAS oncogene family b.
    
 0.512
W5JYH4_ASTMX
Unc-51 like autophagy activating kinase 1a.
    
  0.510
ulk1
Unc-51 like autophagy activating kinase 1.
    
  0.510
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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