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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc90bCoiled-coil domain containing 90B. (261 aa)    
Predicted Functional Partners:
ENSAMXP00000039119
Family with sequence similarity 32 member A.
   
  
 0.698
Nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
      
 0.580
trmt1l
tRNA methyltransferase 1-like; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
      
 0.575
Rab30
RAB30, member RAS oncogene family.
      
 0.575
ENSAMXP00000051739
Ig-like domain-containing protein.
      
 0.573
tmx1
Thioredoxin-related transmembrane protein 1.
      
 0.572
pcf11
PCF11 cleavage and polyadenylation factor subunit.
      
 0.476
Nipal3
NIPA like domain containing 3.
      
 0.473
NIPAL2
NIPA like domain containing 2.
      
 0.473
wdr74
WD repeat domain 74.
      
 0.459
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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