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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nischNischarin. (1426 aa)    
Predicted Functional Partners:
epor
Erythropoietin receptor.
      
 0.577
LOC103045988
Stathmin; Belongs to the stathmin family.
      
 0.574
ENSAMXP00000032761
Uncharacterized protein.
    
  0.566
Rnd2
Rho family GTPase 2.
    
  0.566
Pbrm1
Polybromo 1.
      
 0.509
Brca2
BRCA2 DNA repair associated.
      
 0.499
ENSAMXP00000033034
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  
 0.453
ENSAMXP00000046336
RAB25, member RAS oncogene family a.
    
 0.448
rab25
RAB25, member RAS oncogene family b.
    
 0.448
LOC103024848
Phospholipase.
     
 0.446
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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