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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KDE1_ASTMXUncharacterized protein. (658 aa)    
Predicted Functional Partners:
ENSAMXP00000048439
VWFD domain-containing protein.
 
     0.917
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.769
ENSAMXP00000037755
VWFD domain-containing protein.
 
 
0.707
gle1
GLE1 RNA export mediator.
    
 0.602
LOC103043379
LRRCT domain-containing protein.
    
 0.596
W5KZA4_ASTMX
Uncharacterized protein.
   
 0.579
aaas
Achalasia, adrenocortical insufficiency, alacrimia.
    
 0.559
ENSAMXP00000033034
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.550
nup50
Nucleoporin 50.
     
 0.544
LOC103026007
Anti-silencing function 1Ba histone chaperone.
    
 0.543
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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