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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGALS4Galectin. (337 aa)    
Predicted Functional Partners:
gtf2b
General transcription factor IIB.
      
 0.568
LOC103028364
Hepatitis A virus cellular receptor 2.
    
 0.560
phgdh
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
      
 0.543
W5LCI8_ASTMX
Uncharacterized protein.
      
 0.516
galm
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
      
 0.501
ENSAMXP00000048911
AIRC domain-containing protein.
      
 0.476
traip
TRAF-interacting protein.
      
 0.449
LOC103024912
4-hydroxyphenylpyruvate dioxygenase.
      
 0.426
LOC103021345
4-hydroxyphenylpyruvate dioxygenase.
      
 0.426
tmem97
Transmembrane protein 97; Intracellular orphan receptor that binds numerous drugs and which is highly expressed in various proliferating cells. Corresponds to the sigma-2 receptor, which is thought to play important role in regulating cell survival, morphology and differentiation. May play a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase. May alter the activity of some cytochrome P450 proteins.
     
 0.419
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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