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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KE29_ASTMXInterfer-bind domain-containing protein. (250 aa)    
Predicted Functional Partners:
ifngr1l
Fibronectin type-III domain-containing protein.
     
 0.959
jak1
Tyrosine-protein kinase.
    
 0.944
LOC103044144
Tyrosine-protein kinase.
    
 0.944
LOC103035169
Ubiquinol-cytochrome c reductase, complex III subunit VII.
   
 0.933
LOC103047682
Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family.
   
 0.932
LOC103023575
Cytochrome c-1.
   
 0.930
LOC103027049
Tyrosine-protein kinase.
    
 0.928
jak2
Tyrosine-protein kinase.
    
 0.928
ENSAMXP00000027658
Uncharacterized protein.
     
 0.925
W5JYP8_ASTMX
Interferon phi 1.
   
 
 0.912
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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