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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx28DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (570 aa)    
Predicted Functional Partners:
Utp3
UTP3 small subunit processome component.
   
 0.976
Ngdn
Neuroguidin, EIF4E binding protein.
   
 0.966
ENSAMXP00000043397
ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).
   
 
 0.927
W5LL02_ASTMX
WD repeat domain 46.
   
 0.911
krr1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.904
mrpl4
Mitochondrial ribosomal protein L4.
   
 0.899
ftsj3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 0.891
W5KDC8_ASTMX
Programmed cell death 11.
  
 0.890
malsu1
Si:zfos-1192g2.3.
   
 
 0.884
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
  
0.883
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.