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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103033398FERM and PDZ domain containing 1b. (1613 aa)    
Predicted Functional Partners:
LOC103037210
G protein signaling modulator 2, like.
    
 
 0.556
Gpsm2
Uncharacterized protein.
    
 
 0.556
ENSAMXP00000047176
TPR_REGION domain-containing protein.
    
 
 0.556
gcna
Germ cell nuclear acidic peptidase.
   
  
 0.474
Flad1
Flavin adenine dinucleotide synthetase 1.
      
 0.424
CHRNA9
Cholinergic receptor nicotinic alpha 9 subunit.
      
 0.418
slitrk5
SLIT and NTRK-like family, member 5a.
   
  
 0.415
Fbxo10
F-box protein 10.
      
 0.412
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.