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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zbtb16Zinc finger and BTB domain containing 16a. (665 aa)    
Predicted Functional Partners:
W5LKA6_ASTMX
Nuclear receptor corepressor 1.
    
 0.574
Ncor2
Nuclear receptor corepressor 2.
    
 0.574
W5JYN8_ASTMX
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
      
 0.563
GRIN3A
Glutamate ionotropic receptor NMDA type subunit 3A.
      
 0.543
dazl
Deleted in azoospermia-like.
   
 
 0.529
smarcal1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.
   
 0.496
commd1
Copper metabolism (Murr1) domain containing 1.
     
 0.478
jarid2
Jumonji, AT rich interactive domain 2b.
    
 0.478
W5KX87_ASTMX
Cullin 3a; Belongs to the cullin family.
    
 0.475
cul3
Cullin 3b; Belongs to the cullin family.
    
 0.475
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.