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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103028028Hyaluronan-mediated motility receptor (RHAMM). (895 aa)    
Predicted Functional Partners:
sh3pxd2b
SH3 and PX domains 2B.
     
 0.595
INSC
INSC spindle orientation adaptor protein.
      
 0.580
Scaf1
SR-related CTD-associated factor 1.
      
 0.578
LOC103046668
Amyloid beta (A4) precursor protein b.
    
 0.540
APP
Amyloid beta precursor protein.
    
 0.540
App
BPTI/Kunitz inhibitor domain-containing protein.
    
 0.540
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
  0.526
rad50
RAD50 homolog, double strand break repair protein.
   
 0.482
ENSAMXP00000033840
Hyaluronidase.
    
 0.480
aplp2
Amyloid beta (A4) precursor-like protein 2.
    
 0.478
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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