STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103039280Serine/threonine kinase 25b. (425 aa)    
Predicted Functional Partners:
pdcd10
Programmed cell death 10b.
    
 
 0.688
LOC103036474
Programmed cell death 10a.
    
 
 0.688
LOC103025953
Calcium binding protein 39, like 1.
    
 
 0.687
cab39l
Calcium binding protein 39-like.
    
 
 0.687
lrsam1
Leucine rich repeat and sterile alpha motif containing 1.
   
 
 0.683
ENSAMXP00000030766
Achaete-scute family bHLH transcription factor 1b.
   
 
 0.682
Strip1
Striatin interacting protein 1.
    
 
 0.617
ENSAMXP00000052465
Striatin interacting protein 2.
    
 
 0.617
LOC103040199
Uncharacterized protein.
    
 
 0.615
LOC103042482
MOB family member 4, phocein.
    
 
 0.615
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.