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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx10RNA helicase. (887 aa)    
Predicted Functional Partners:
ENSAMXP00000043397
ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).
   
 
 0.997
UTP14C
UTP14C small subunit processome component.
   
 0.995
nom1
Nucleolar protein with MIF4G domain 1.
   
 
 0.983
abt1
Activator of basal transcription 1.
   
 
 0.982
Utp3
UTP3 small subunit processome component.
   
 0.981
nol6
Nucleolar protein 6.
   
 0.975
Ddx18
RNA helicase.
  
  
0.969
ENSAMXP00000034680
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
  
0.968
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.966
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.966
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.