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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KFM3_ASTMXOTU deubiquitinase with linear linkage specificity b. (299 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
    
 0.901
LOC103040600
Si:dkey-181m9.8.
    
 0.868
rnf31
Uncharacterized protein.
    
 0.868
LOC103042649
Uncharacterized protein.
    
 0.868
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.862
W5KFM9_ASTMX
SHANK-associated RH domain interacting protein.
    
 0.857
rps27a
Ribosomal protein S27a.
    
 0.854
LOC103026625
Sorting nexin 27a.
    
 
 0.797
snx27
Sorting nexin 27b.
    
 
 0.797
rbck1
RanBP-type and C3HC4-type zinc finger containing 1.
    
 0.781
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.