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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KFU7_ASTMXPolypyrimidine tract binding protein 1a. (514 aa)    
Predicted Functional Partners:
W5K1V7_ASTMX
Heterogeneous nuclear ribonucleoprotein L.
   
0.653
Hnrnpll
Uncharacterized protein.
   
0.653
hnrnpl
Heterogeneous nuclear ribonucleoprotein L2.
   
0.653
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.652
LOC103043638
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.652
Ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.643
LOC103027270
Serine and arginine rich splicing factor 2a.
   
 0.626
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
   
 0.563
W5LRW4_ASTMX
Uncharacterized protein.
   
 0.563
ENSAMXP00000033833
Uncharacterized protein.
   
 0.563
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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