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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KFX2_ASTMXContactin 5. (1029 aa)    
Predicted Functional Partners:
Ptprg
Protein tyrosine phosphatase receptor type Ga.
    
 0.621
W5LC51_ASTMX
Protein-tyrosine-phosphatase.
    
 0.598
LOC103046668
Amyloid beta (A4) precursor protein b.
   
 
 0.541
APP
Amyloid beta precursor protein.
   
 
 0.541
App
BPTI/Kunitz inhibitor domain-containing protein.
   
 
 0.541
W5KFS3_ASTMX
Uncharacterized protein.
    
0.531
W5KRV1_ASTMX
Neurofascin homolog (chicken) a.
    
0.531
W5L0Z5_ASTMX
L1 cell adhesion molecule, paralog a.
    
0.531
NRCAM
Neuronal cell adhesion molecule.
    
0.531
W5LAW7_ASTMX
Neuronal cell adhesion molecule a.
    
0.531
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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