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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103022594Uncharacterized protein. (398 aa)    
Predicted Functional Partners:
Drg1
Uncharacterized protein.
    
   0.543
cs
Citrate synthase; Belongs to the citrate synthase family.
    
   0.524
Pole2
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
    
   0.524
c24h15orf40
Zgc:193812.
    
   0.524
c3hxorf56
Zgc:103697.
    
   0.524
drg2
Developmentally regulated GTP binding protein 2.
    
   0.495
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 
 0.486
ENSAMXP00000033034
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.473
vps53
VPS53 subunit of GARP complex.
     
 0.436
LOC103037168
cAMP responsive element binding protein 3-like 3 like.
      
 0.406
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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