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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KFY4_ASTMXUncharacterized protein. (1700 aa)    
Predicted Functional Partners:
pkd1l2
Polycystic kidney disease 1 like 2a.
  
 
 
0.888
LOC103031316
Polycystic kidney disease 2-like 1.
    
 
0.687
pkd2
Polycystic kidney disease 2.
    
 
0.687
W5K6R9_ASTMX
Ion_trans domain-containing protein.
      
 0.665
ENSAMXP00000034599
LSDAT_euk domain-containing protein.
      
 0.665
ENSAMXP00000043999
Uncharacterized protein.
      
 0.665
ENSAMXP00000051473
LSDAT_euk domain-containing protein.
      
 0.665
ENSAMXP00000038861
Myotilin.
    
 
 0.628
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.569
dhodh
Dihydroorotate dehydrogenase.
      
 0.552
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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