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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
igsf5Immunoglobulin superfamily, member 5a. (355 aa)    
Predicted Functional Partners:
LOC103040795
Membrane associated guanylate kinase, WW and PDZ domain containing 1a.
    
 0.951
magi1
Membrane associated guanylate kinase, WW and PDZ domain containing 1b.
    
 0.951
Edrf1
Uncharacterized protein.
      
 0.544
W5L312_ASTMX
Intraflagellar transport 80 homolog (Chlamydomonas).
      
 0.522
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
      
 0.516
Zfyve26
Zinc finger, FYVE domain containing 26.
      
 0.514
LOC103028763
Immunoglobulin-like domain containing receptor 1b.
      
 0.511
LOC103023571
S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
      
 0.509
eif1ax
Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
      
 0.509
Magi3
Wu:fi36a10.
    
 
 0.456
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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