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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KGA9_ASTMXMatrilin 3a. (461 aa)    
Predicted Functional Partners:
LOC103047128
Lumican.
   
 0.662
MFAP2
Microfibril associated protein 2.
   
 0.505
Rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 0.471
LOC103043208
Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family.
   
 
 0.461
LOC103024357
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
   
 
 0.461
ENSAMXP00000038912
Uncharacterized protein.
   
  0.445
ENSAMXP00000054481
Si:ch211-79k12.1.
   
  0.445
rbpj
Recombination signal binding protein for immunoglobulin kappa J region b.
    
 0.428
LOC103029567
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.428
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.415
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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