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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
swi5SWI5 homologous recombination repair protein. (140 aa)    
Predicted Functional Partners:
bloc1s1
Biogenesis of lysosomal organelles complex-1, subunit 1.
   
 
 0.872
snapin
SNAP associated protein.
   
 
 0.868
LOC103026808
Dystrobrevin binding protein 1b.
    
 
 0.831
Bloc1s6
Biogenesis of lysosomal organelles complex-1, subunit 6, pallidin.
    
 
 0.715
borcs7
BLOC-1 related complex subunit 7.
    
 
 0.662
borcs8
BLOC-1 related complex subunit 8.
   
 
 0.636
borcs6
Si:dkey-72l14.4.
    
 
 0.628
bloc1s5
Biogenesis of lysosome-related organelles complex 1 subunit 5; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO).
    
 
 0.596
Bloc1s3
Biogenesis of lysosomal organelles complex-1, subunit 3.
    
 
 0.586
kxd1
KxDL motif containing 1.
    
 
 0.579
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.