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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jmjd6Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (403 aa)    
Predicted Functional Partners:
LOC103037832
Bromodomain containing 4.
    
 
 0.595
LOC103032475
Bromodomain containing 3a.
    
 
 0.583
BRD3
Bromodomain containing 3.
    
 
 0.583
LOC103023197
Bromodomain containing 2a.
    
 
 0.583
LOC103040769
Bromodomain, testis-specific.
    
 
 0.583
W5LCN9_ASTMX
Uncharacterized protein.
    
 
 0.583
ENSAMXP00000032787
Uncharacterized protein.
    
 
 0.583
ENSAMXP00000052704
Bromo domain-containing protein.
    
 
 0.583
kdm8
Lysine (K)-specific demethylase 8.
      
 0.578
W5LRM9_ASTMX
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.557
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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