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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf12PHD finger protein 12a. (1002 aa)    
Predicted Functional Partners:
morf4l1
Mortality factor 4 like 1.
    
 
 0.989
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 
 0.947
W5K820_ASTMX
Translocase of outer mitochondrial membrane 20.
    
 
 0.947
gatad1
GATA zinc finger domain containing 1.
    
 
 0.931
W5KBB5_ASTMX
SIN3 transcription regulator family member Ab.
   
 
 0.904
Sin3a
SIN3 transcription regulator family member Aa.
   
 
 0.904
Sin3b
SIN3 transcription regulator family member B.
   
 
 0.904
LOC103023991
Retinoblastoma binding protein 4, like.
    
 
 0.903
rbbp4
Retinoblastoma binding protein 4.
    
 
 0.903
W5KNA4_ASTMX
EMSY transcriptional repressor, BRCA2 interacting.
   
 
 0.874
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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