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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KH64_ASTMXSi:ch211-176g13.8. (798 aa)    
Predicted Functional Partners:
W5KJM9_ASTMX
Uncharacterized protein.
   
 0.784
ENSAMXP00000031362
Uncharacterized protein.
   
 0.784
ENSAMXP00000037400
Uncharacterized protein.
   
 0.784
ENSAMXP00000041639
SH3 domain-containing protein.
   
 0.784
ENSAMXP00000045117
EH domain-containing protein.
   
 0.784
ENSAMXP00000052579
Uncharacterized protein.
   
 0.782
W5KYW6_ASTMX
Intersectin 1 (SH3 domain protein).
   
0.679
W5L9N1_ASTMX
F-BAR domain-containing protein.
    
 0.594
ENSAMXP00000028009
F-BAR domain-containing protein.
    
 0.594
tsen2
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
   0.557
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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