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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dnai1Dynein, axonemal, intermediate chain 1, paralog 2. (643 aa)    
Predicted Functional Partners:
W5L2P3_ASTMX
Radial spoke head component 4A.
   
  
 0.817
dctn2
Dynactin 2 (p50).
    
 0.802
W5KJG3_ASTMX
Dynein, axonemal, heavy chain 5.
  
 0.795
LOC103039823
NME/NM23 family member 8; Belongs to the NDK family.
    
 
 0.792
dnal4
Dynein light chain.
    
 0.755
LOC103025073
Dynein light chain roadblock-type 2.
   
 0.741
ENSAMXP00000044524
REJ domain-containing protein.
   
 0.741
tekt3
Tektin 3.
   
  
 0.727
W5LBS2_ASTMX
Dynactin 3 (p22).
    
 0.724
W5K6I2_ASTMX
Dynein, cytoplasmic 2, light intermediate chain 1.
    
 0.722
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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