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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zmat5Zinc finger, matrin-type 5. (172 aa)    
Predicted Functional Partners:
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.984
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.983
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.981
snrpg
Small nuclear ribonucleoprotein G.
   
 0.978
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
   
 0.975
sf3b1
Splicing factor 3b, subunit 1.
   
 0.973
sf3b4
Splicing factor 3b, subunit 4.
   
 0.971
sf3b2
Splicing factor 3b, subunit 2.
   
 0.961
LOC103041055
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.958
LOC103041055-2
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.958
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.