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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103026953High mobility group nucleosomal binding domain 7. (95 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.998
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
  
 0.976
LOC103040128
Ribosomal protein L26.
  
 0.976
Rpl17
Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
  
 0.975
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 0.975
rpl31
Ribosomal protein L31.
  
 0.975
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.975
rpl32
Ribosomal protein L32.
   
 0.974
rpl8
Ribosomal protein L8.
  
 0.974
rpl6
Ribosomal protein L6.
   
 0.973
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.