W5KI16_ASTMX protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

W5KI16_ASTMX

Myosin N-terminal SH3-like domain-containing protein. (170 aa)

Predicted Functional Partners:

LOC103022703

0.778

LOC103030419

0.643

Tnni1

0.612

W5LSN2_ASTMX

0.602

LOC103034677

0.599

LOC103022042

0.536

LOC103021650

0.533

ENSAMXP00000039253

0.533

LOC103035007

0.530

LOC103044939

0.529

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000039253	LOC103021650	ENSAMXP00000039253	ENSAMXP00000001726	Uncharacterized protein.	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	0.543
ENSAMXP00000039253	LOC103022042	ENSAMXP00000039253	ENSAMXP00000022221	Uncharacterized protein.	Troponin I type 2b (skeletal, fast), tandem duplicate 1.	0.401
ENSAMXP00000039253	LOC103022703	ENSAMXP00000039253	ENSAMXP00000006930	Uncharacterized protein.	Myosin, light chain 1, alkali; skeletal, fast.	0.849
ENSAMXP00000039253	LOC103030419	ENSAMXP00000039253	ENSAMXP00000035692	Uncharacterized protein.	Myosin, light chain 13.	0.737
ENSAMXP00000039253	LOC103034677	ENSAMXP00000039253	ENSAMXP00000028429	Uncharacterized protein.	Zgc:163073.	0.738
ENSAMXP00000039253	LOC103035007	ENSAMXP00000039253	ENSAMXP00000037624	Uncharacterized protein.	Troponin I type 2a (skeletal, fast), tandem duplicate 1.	0.401
ENSAMXP00000039253	LOC103044939	ENSAMXP00000039253	ENSAMXP00000032305	Uncharacterized protein.	Si:rp71-17i16.4.	0.636
ENSAMXP00000039253	Tnni1	ENSAMXP00000039253	ENSAMXP00000044317	Uncharacterized protein.	Troponin I type 1b (skeletal, slow).	0.459
ENSAMXP00000039253	W5KI16_ASTMX	ENSAMXP00000039253	ENSAMXP00000007228	Uncharacterized protein.	Myosin N-terminal SH3-like domain-containing protein.	0.533
ENSAMXP00000039253	W5LSN2_ASTMX	ENSAMXP00000039253	ENSAMXP00000025987	Uncharacterized protein.	Uncharacterized protein.	0.738
LOC103021650	ENSAMXP00000039253	ENSAMXP00000001726	ENSAMXP00000039253	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	Uncharacterized protein.	0.543
LOC103021650	LOC103022042	ENSAMXP00000001726	ENSAMXP00000022221	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	Troponin I type 2b (skeletal, fast), tandem duplicate 1.	0.401
LOC103021650	LOC103022703	ENSAMXP00000001726	ENSAMXP00000006930	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	Myosin, light chain 1, alkali; skeletal, fast.	0.849
LOC103021650	LOC103030419	ENSAMXP00000001726	ENSAMXP00000035692	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	Myosin, light chain 13.	0.741
LOC103021650	LOC103034677	ENSAMXP00000001726	ENSAMXP00000028429	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	Zgc:163073.	0.738
LOC103021650	LOC103035007	ENSAMXP00000001726	ENSAMXP00000037624	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	Troponin I type 2a (skeletal, fast), tandem duplicate 1.	0.401
LOC103021650	LOC103044939	ENSAMXP00000001726	ENSAMXP00000032305	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	Si:rp71-17i16.4.	0.636
LOC103021650	Tnni1	ENSAMXP00000001726	ENSAMXP00000044317	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	Troponin I type 1b (skeletal, slow).	0.459
LOC103021650	W5KI16_ASTMX	ENSAMXP00000001726	ENSAMXP00000007228	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	Myosin N-terminal SH3-like domain-containing protein.	0.533
LOC103021650	W5LSN2_ASTMX	ENSAMXP00000001726	ENSAMXP00000025987	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	Uncharacterized protein.	0.738