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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TUT4Terminal uridylyl transferase 4. (1498 aa)    
Predicted Functional Partners:
lin28a
Lin-28 homolog A.
   
 0.671
W5LK98_ASTMX
DIS3 like 3'-5' exoribonuclease 2; Belongs to the RNR ribonuclease family.
   
 
 0.590
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
    
 0.544
pabpc1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.501
W5LHL8_ASTMX
Poly(A) binding protein, cytoplasmic 4 (inducible form).
   
 0.501
LOC103022532
Poly(A) binding protein, cytoplasmic 1-like.
   
 0.501
LOC103030422
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.501
Sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
   
 
 0.473
LIN28B
Lin-28 homolog B.
   
 0.470
LOC103047343
Lin-28 homolog B (C. elegans).
   
 0.470
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.