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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KJ59_ASTMXUncharacterized protein. (690 aa)    
Predicted Functional Partners:
Smchd1
Structural maintenance of chromosomes flexible hinge domain containing 1.
    
 
 0.639
rrp15
Ribosomal RNA processing 15 homolog.
      
 0.564
Sdad1
SDA1 domain containing 1.
      
 0.564
cacybp
Calcyclin binding protein.
      
 0.499
srbd1
S1 RNA binding domain 1.
      
 0.482
znf451
Zinc finger protein 451.
      
 0.469
znf512b
Zinc finger protein 512B.
      
 0.416
znf512
Zinc finger protein 512.
      
 0.416
rmnd5b
Required for meiotic nuclear division 5 homolog B.
      
 0.412
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.