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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KJ71_ASTMXSi:ch211-39k3.2. (62 aa)    
Predicted Functional Partners:
cdv3
Carnitine deficiency-associated gene expressed in ventricle 3.
      
 0.576
rpp40
Ribonuclease P/MRP 40 subunit.
      
 0.522
lrrc57
Leucine rich repeat containing 57.
      
 0.520
dap
Death-associated protein.
      
 0.518
Zfyve19
FYVE-type domain-containing protein.
      
 0.495
hypk
Huntingtin interacting protein K.
   
  
 0.493
Tma7
Translation machinery associated 7 homolog.
   
    0.485
LOC103027934
Pdgfa associated protein 1a.
      
 0.454
ENSAMXP00000054717
Pdgfa associated protein 1b.
      
 0.454
LOC103026281
Uncharacterized protein; Belongs to the synuclein family.
    
 
 0.441
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.