Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC103034619Glutamate receptor, ionotropic, AMPA 1a. (914 aa)    
Predicted Functional Partners:
ENSAMXP00000046175
Lig_chan-Glu_bd domain-containing protein.
   
 0.853
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
   
 0.853
LOC103028119
Glutamate receptor, ionotropic, AMPA 2a.
   
 0.832
ENSAMXP00000030637
Cornichon family AMPA receptor auxiliary protein 2.
   
 0.812
cnih1
Cornichon family AMPA receptor auxiliary protein 1.
    
 0.795
pick1
Protein interacting with prkca 1.
    
 0.779
W5KVG0_ASTMX
Glutamate receptor interacting protein 1.
   
 0.774
LOC103030552
Cornichon family AMPA receptor auxiliary protein 3.
   
 0.756
cnih4
Cornichon family AMPA receptor auxiliary protein 4.
    
 0.701
sec24c
SEC24 homolog C, COPII coat complex component.
     
 0.691
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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