ARHGAP17 protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ARHGAP17

Rho GTPase activating protein 17b. (804 aa)

Predicted Functional Partners:

LOC103034468

0.949

LOC103039613

0.933

LOC103034811

0.930

LOC103036249

0.930

LOC103034053

0.929

ENSAMXP00000041200

0.929

LOC111192975

0.929

LOC103023232

0.926

amotl2

0.911

LOC103037702

0.911

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGAP17	ENSAMXP00000041200	ENSAMXP00000007990	ENSAMXP00000041200	Rho GTPase activating protein 17b.	Uncharacterized protein.	0.929
ARHGAP17	LOC103023232	ENSAMXP00000007990	ENSAMXP00000045519	Rho GTPase activating protein 17b.	Ras homolog family member Ga.	0.926
ARHGAP17	LOC103034053	ENSAMXP00000007990	ENSAMXP00000009183	Rho GTPase activating protein 17b.	Rac family small GTPase 1a.	0.929
ARHGAP17	LOC103034468	ENSAMXP00000007990	ENSAMXP00000034910	Rho GTPase activating protein 17b.	Cell division cycle 42.	0.949
ARHGAP17	LOC103034811	ENSAMXP00000007990	ENSAMXP00000040291	Rho GTPase activating protein 17b.	Angiomotin_C domain-containing protein.	0.930
ARHGAP17	LOC103036249	ENSAMXP00000007990	ENSAMXP00000049186	Rho GTPase activating protein 17b.	Angiomotin.	0.930
ARHGAP17	LOC103037702	ENSAMXP00000007990	ENSAMXP00000028657	Rho GTPase activating protein 17b.	Angiomotin like 2b.	0.911
ARHGAP17	LOC103039613	ENSAMXP00000007990	ENSAMXP00000044931	Rho GTPase activating protein 17b.	Uncharacterized protein.	0.933
ARHGAP17	LOC111192975	ENSAMXP00000007990	ENSAMXP00000050261	Rho GTPase activating protein 17b.	Rac family small GTPase 1b.	0.929
ARHGAP17	amotl2	ENSAMXP00000007990	ENSAMXP00000004765	Rho GTPase activating protein 17b.	Angiomotin like 2a.	0.911
ENSAMXP00000041200	ARHGAP17	ENSAMXP00000041200	ENSAMXP00000007990	Uncharacterized protein.	Rho GTPase activating protein 17b.	0.929
ENSAMXP00000041200	LOC103034468	ENSAMXP00000041200	ENSAMXP00000034910	Uncharacterized protein.	Cell division cycle 42.	0.535
ENSAMXP00000041200	LOC103039613	ENSAMXP00000041200	ENSAMXP00000044931	Uncharacterized protein.	Uncharacterized protein.	0.475
LOC103023232	ARHGAP17	ENSAMXP00000045519	ENSAMXP00000007990	Ras homolog family member Ga.	Rho GTPase activating protein 17b.	0.926
LOC103034053	ARHGAP17	ENSAMXP00000009183	ENSAMXP00000007990	Rac family small GTPase 1a.	Rho GTPase activating protein 17b.	0.929
LOC103034053	LOC103034468	ENSAMXP00000009183	ENSAMXP00000034910	Rac family small GTPase 1a.	Cell division cycle 42.	0.532
LOC103034053	LOC103039613	ENSAMXP00000009183	ENSAMXP00000044931	Rac family small GTPase 1a.	Uncharacterized protein.	0.473
LOC103034468	ARHGAP17	ENSAMXP00000034910	ENSAMXP00000007990	Cell division cycle 42.	Rho GTPase activating protein 17b.	0.949
LOC103034468	ENSAMXP00000041200	ENSAMXP00000034910	ENSAMXP00000041200	Cell division cycle 42.	Uncharacterized protein.	0.535
LOC103034468	LOC103034053	ENSAMXP00000034910	ENSAMXP00000009183	Cell division cycle 42.	Rac family small GTPase 1a.	0.532