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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103047291Si:ch73-264p11.1. (137 aa)    
Predicted Functional Partners:
mrps23
Mitochondrial ribosomal protein S23.
      
 0.671
ENSAMXP00000039227
Cyclin G associated kinase.
   
 
 0.666
cip2a
Cell proliferation regulating inhibitor of protein phosphatase 2A.
     
 0.595
W5LCJ8_ASTMX
Intraflagellar transport 57 homolog (Chlamydomonas).
      
 0.571
morc2
MORC family CW-type zinc finger 2.
      
 0.570
W5LE72_ASTMX
GRB2 related adaptor protein 2b.
   
 0.559
LOC103029038
GRB2 related adaptor protein 2a.
   
 0.559
Pde6d
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]
    
 0.553
prpf19
Pre-mRNA processing factor 19.
    
   0.548
W5KJB7_ASTMX
IGv domain-containing protein.
   
 0.534
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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