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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tonslTonsoku-like, DNA repair protein. (1429 aa)    
Predicted Functional Partners:
mcm2
DNA helicase; Belongs to the MCM family.
   
   0.892
mms22l
MMS22-like, DNA repair protein.
    
 
 0.848
rps27a
Ribosomal protein S27a.
    
  0.697
LOC103026007
Anti-silencing function 1Ba histone chaperone.
   
 
 0.679
Apaf1
Apoptotic peptidase activating factor 1.
    
 0.621
aptx
Aprataxin.
   
  
 0.615
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.604
ENSAMXP00000043505
Ubiquitin-like domain-containing protein.
    
  0.604
W5L0T6_ASTMX
Inhibitor of nuclear factor kappa B kinase subunit beta.
   
 0.591
chuk
Component of inhibitor of nuclear factor kappa B kinase complex.
   
 0.582
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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