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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103039714Si:dkey-208k4.2. (385 aa)    
Predicted Functional Partners:
Gtf3c1
B-block_TFIIIC domain-containing protein.
    
 0.661
ENSAMXP00000051148
Uncharacterized protein.
    
 0.661
W5L3E2_ASTMX
SANT domain-containing protein.
    
 0.650
LOC103025922
SANT domain-containing protein.
    
 0.650
W5KPZ4_ASTMX
General transcription factor IIIC, polypeptide 3.
    
 0.632
SBSPON
Somatomedin B and thrombospondin type 1 domain containing.
    
 
 0.617
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.614
polr2l
Polymerase (RNA) II (DNA directed) polypeptide L.
    
 0.594
POLR2F
RNA polymerase II subunit F.
   
 
 0.593
LOC103040939
BRF1 RNA polymerase III transcription initiation factor subunit a.
   
 
 0.589
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.