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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubac1UBA domain containing 1. (426 aa)    
Predicted Functional Partners:
W5K9D2_ASTMX
Ring finger protein 123.
   
 
 0.933
rps27a
Ribosomal protein S27a.
    
 0.595
LOC103044311
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.577
zfand4
Zinc finger, AN1-type domain 4.
    
 0.546
Pmpca
Peptidase (mitochondrial processing) alpha; Belongs to the peptidase M16 family.
   
  
 0.541
rbp7
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
      
 0.534
W5KDQ3_ASTMX
Ubiquitin-like 7b (bone marrow stromal cell-derived).
    
 0.524
ubl7
Ubiquitin-like 7a (bone marrow stromal cell-derived).
    
 0.524
surf6
Surfeit 6.
      
 0.519
nub1
Negative regulator of ubiquitin-like proteins 1.
      
 0.518
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.