Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
W5KL87_ASTMXUncharacterized protein. (224 aa)    
Predicted Functional Partners:
Brca2
BRCA2 DNA repair associated.
    
 
 0.831
iqcb1
IQ motif containing B1.
      
 0.624
tmem183a
Transmembrane protein 183A.
      
 0.617
CLSPN
Claspin.
      
 0.600
haus8
Si:ch211-153a8.4.
      
 0.600
rpa3
Uncharacterized protein.
      
 0.596
nus1
NUS1 dehydrodolichyl diphosphate synthase subunit.
      
 0.589
LOC111191046
Synaptonemal complex central element protein 2.
      
 0.578
ENSAMXP00000050586
SWIM-type zinc finger 7 associated protein 1.
      
 0.570
Hfm1
Helicase for meiosis 1.
      
 0.568
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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