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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5KM54_ASTMXSi:ch211-284e13.11. (118 aa)    
Predicted Functional Partners:
ikbkg
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
 0.725
rps27a
Ribosomal protein S27a.
   
 0.673
LOC103041009
Tumor necrosis factor b (TNF superfamily, member 2).
   
 0.670
ENSAMXP00000032156
Zgc:194655.
  
 0.612
Birc6
Baculoviral IAP repeat containing 6.
    
 0.602
ENSAMXP00000040314
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.602
LOC103034960
OTU deubiquitinase with linear linkage specificity a.
    
 0.596
W5KFM3_ASTMX
OTU deubiquitinase with linear linkage specificity b.
    
 0.596
cul5
Cullin 5a; Belongs to the cullin family.
    
 
 0.593
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.564
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.