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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Setbp1SET binding protein 1. (1439 aa)    
Predicted Functional Partners:
eed
Embryonic ectoderm development.
    
 0.660
arid4a
AT rich interactive domain 4A (RBP1-like).
   
 
 0.625
W5K820_ASTMX
Translocase of outer mitochondrial membrane 20.
   
 
 0.625
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.612
morf4l1
Mortality factor 4 like 1.
   
 
 0.588
MSL3
MSL complex subunit 3.
   
 
 0.588
LOC103039286
ASXL transcriptional regulator 1.
    
 0.586
ENSAMXP00000028914
Histone H3; Belongs to the histone H3 family.
   
 0.581
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.581
LOC103028202
Histone H3; Belongs to the histone H3 family.
   
 0.581
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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