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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmem167aProtein kish; Involved in the early part of the secretory pathway. (73 aa)    
Predicted Functional Partners:
ENSAMXP00000038669
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.681
golga5
Golgin A5.
   
  
 0.581
ENSAMXP00000047536
Nucleophosmin/nucleoplasmin, 3.
      
 0.577
WDR7
WD repeat domain 7.
      
 0.546
LOC103037059
G protein-coupled receptor 153.
      
 0.533
W5KNT1_ASTMX
Ubiquitin specific peptidase 32; Belongs to the peptidase C19 family.
      
 0.520
LOC103023192
Uncharacterized protein; Belongs to the peptidase C19 family.
      
 0.520
vgll4
Vestigial-like family member 4b.
      
 0.499
LOC103034195
Vestigial-like family member 4a.
      
 0.499
YPEL5
Protein yippee-like; Belongs to the yippee family.
      
 0.497
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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