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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptar1Protein prenyltransferase alpha subunit repeat containing 1. (447 aa)    
Predicted Functional Partners:
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.979
ENSAMXP00000038452
CHM Rab escort protein.
   
 0.959
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 
 0.861
LOC103039216
YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.
    
 
 0.856
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 
 0.856
Rab26
Uncharacterized protein.
    
 0.726
rab18
RAB18B, member RAS oncogene family.
    
 0.663
LOC103025908
RAB9A, member RAS oncogene family.
    
 0.629
rab9a
RAB9A, member RAS oncogene family.
    
 0.629
LOC103026314
RAB9B, member RAS oncogene family.
    
 0.629
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.